Amos' WWW links page

Protein 3D structure and associated topics databases
PDB - Protein Data Bank [Mirrors in EBI] BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia] Mol_R_Us - Molecules R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server PRESAGE - Collaborative resource for structural genomics ReLiBase - Receptor/ligand complexes db [Mirror in USA] TOPS - Protein topology atlas CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) HSSP - Homology-derived secondary structure of proteins db MutaProt - Comparison of PDB files which differ by point mutations   SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
Back to TOP

Protein 2D-PAGE and MS databases
WORLD-2DPAGE - A complete index of 2D-PAGE db and servers Phoretix links - Phoretix page of links to 2D gel db
Back to TOP

Nucleotide and associated topics databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan dbEST - dbEST (Expressed Sequence Tags) db (NCBI) dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI)   NDB - Nucleic Acid Databank (3D structures) BNASDB - Nucleic acid structure db from University of Pune   AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNADB - uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db SOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding sites TelDB - Multimedia Telomere Resource TRADAT - TRAnscription Databases and Analysis Tools Subviral RNA db - Small circular RNAs db (viroid and viroid-like)   MPDB - Molecular probe db OPD - Oligonucleotide probe db VectorDB - Vector sequence db (seems dead!)
Back to TOP

Carbohydrates resources
TGN - The Glycoscience Network FCCA - Forum Carbohydrates Coming of Age CARBHYD - Carbohydrate information WWW sites GlycoSuiteDB - Db of glycan structures Monosacharide browser - Space filling Fischer projection for monosaccharides Thorkild's lectin page - Gateway to lectins
Back to TOP

Species specific databases
Human
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes UDB - Unified db for Human genome mapping Ensembl - Human genome annotations site UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome GENOTK - Human cDNA db HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) HUNT - Human Novel Transcripts CGAP - Cancer Genome Anatomy Project SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 1 Chr2 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 2 Chr3 - Human chromosome 3 db at the University of Texas Health Science Center Chr3 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 3 Chr4 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 4 Chr5 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 5 Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 6 Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children Chr7 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 7 Chr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8 Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9 Chr9 - Human chromosome 9 db Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 10 11DB - Human chromosome 11 db at Imperial College (U.K.) Chr11 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 11 Chr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12 Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 13 Chr14 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 14 Chr15 UBC - Human chromosome 15 WWW page at UBC Chr15 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 15 Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 16 Chr17 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 17 Chr18 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr19 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 19 Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20 Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan) Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21 Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22 ChrX at Sanger - Sanger Center chromosome 1 project IXDB - Integrated X chromosome db ChrX SWISS-PROT list - Links to SWISS-PROT entries from human chromosome X ChrY SWISS-PROT list - Links to SWISS-PROT entries from human chromosome Y
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | UK | Japan] TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) Mouse gene knockouts db RGD - Rat genome db RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters)   BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PiGBASE - Pig genome db SheepBASE - Sheep genome db (also known as SheepMap) MIS - Mendelian Inheritance in Sheep   Chickmap - Chicken genome db (ChickBase) Turkey mapping db Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Medakafish - Mekada fish (Oryzias latipes) server Ark-Tilapia - Tilapia mossambica genome db The fish net - Zebrafish server FishBase - Global information system on fishes
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region sequences compilation MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)   C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
Insects
Drosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entries FlyBase - Drosophila genetic and molecular db [Mirror at EBI] FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-World Server FlyNets - Db of molecular interactions in Drosophila melanogaster SOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding sites Drosophila P450 Web site Homophila - Human Disease to Drosophila gene db Mosquito Genomics AnoDB - Anopheles gambiae db
Invertebrates
WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas Southwestern ACeDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group) C.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries WormPep - C.elegans proteins db WormPD - C.elegans protein db   Dictystelium Genome Sequencing project at BCM Dictyostelium discoideum genome project at IENA DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA project   Cone shells Web site   Parasite genomes db and resources Parasite genomes WWW site   PlasmoDB - P.falciparum genome db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger PFDB - Plasmodium falciparum Genome db P.falciparum - Plasmodium falciparum Gene Sequence Tag project MAD - Malaria Antigen db Malaria parasite metabolic pathways   Giardia lamblia genome project LGN - Leishmania Genome Network Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library ARS Genome Database Resource - Access to many plant genome databases at the USDA-ARS Mendel - Plant gene nomenclature database from CPGN   TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR AtGI - TIGR Arabidopsis thaliana Gene Index Arabidopsis ABC transporters AMPL - Arabidopsis Membrane Protein Library Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc.   BeanGenes - Beans genome db BeanRef - Beans genome db and other resources ChlamyDB - Chlamydomonas reinhardtii genome db CottonDB - Cotton genome db MaizeDb - Maize genome db INRA Maize - INRA Maize genome db Pisum sativum (pea) web site RGP - Rice Genome Research Program RiceGenes Rice-research.org - Monsanto rice genome site TIGR OsGI - TIGR Rice Genome project TIGR Potato - TIGR Potato Functional Genomics project TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site SorghumDB - Sorghum genome db SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db
Fungi
FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource   Yeast SWISS-PROT list - Links to S.cerevisiae WWW sites and to SWISS-PROT entries CYGD - MIPS Comprehensive Yeast Genome db SGD - Saccharomyces genome db YPD - Yeast proteome db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db YMPL - Yeast Membrane Protein Library PathCalling - Yeast protein-protein interaction db   Aspergillus web site C.albicans SWISS-PROT list - Links to C.albicans WWW sites and to SWISS-PROT entries Candida albicans - Candida albicans server at the Univ. of Minnesota Neurospora crassa db NGP - Neurospora crassa genome project PC - Pneumocystis carinii genome project S.pombe SWISS-PROT list - Links to S.pombe WWW sites and to SWISS-PROT entries S.pombe genome project S.pombe NIH - S.pombe server at the NIH Forsburg lab pombe pages Phycomyces Web site - Resource site for scientists working on Phycomyces
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes   E.coli SWISS-PROT list - Links to E.coli WWW sites and to SWISS-PROT entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Insitute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ   B.subtilis SWISS-PROT list - Links to B.subtilis WWW sites and to SWISS-PROT entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirror in Japan] Micado - Microbial advanced db (B.subtilis + E.coli) BSORF - Japanese server on B.subtilis   A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.halodurans - Bacillus halodurans strain C-125 db B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.pertussis - Bordetella pertussis genome WWW site BbDB - TIGR Borrelia burgdorferi genome db iBGD - Integrated Buchnera genome db B.cepacia - Burkholderia cepacia genome project C.jejuni - Campylobacter jejuni strain NCTC 11168 genome WWW site Chlamydia - Chlamydia pneumoniae and trachomatis C.muridarum - TIGR Chlamydia muridarum strain MoPn genome db C.pneumoniae AR39 - TIGR Chlamydia pneumoniae strain AR39 genome db C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data C.hutchinsonii - Cytophaga hutchinsonii genome project DrDB - TIGR Deinococcus radiodurans strain R1 genome db D.hafniense - Desulfitobacterium hafniense genome project E.faecium - Enterococcus faecium genome project F.acidarmanus - Ferroplasma acidarmanus genome project F.tularensis - Francisella tularensis genome WWW site H.influenzae SWISS-PROT list - Links to H.influenzae WWW sites and to SWISS-PROT entries HiDB - TIGR H.influenzae genome db H.pylori SWISS-PROT list - Links to H.pylori WWW sites and to SWISS-PROT entries HpDB - TIGR Helicobacter pylori strain 26695 genome db H.pylori J99 - Astra Helicobacter pylori strain J99 genome db PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db MC-1 - Magnetococcus MC-1 genome project M.magnetotacticum - Magnetospirillum magnetotacticum genome project MycDB - Mycobacterium db Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Sanger Centre M.leprae genome project TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome db M.tuberculosis at Sanger - Sanger Centre M.tuberculosis H37Rv genome project M.tuberculosis secreted proteins M.tuberculosis structural genomics consortium M.genitalium SWISS-PROT list - Links to M.genitalium SWISS-PROT entries MgDB - TIGR Mycoplasma genitalium genome db M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db N.meningitidis A - Sanger Centre Neisseria meningitidis serogroup A strain Z2491 genome project N.meningitidis B - TIGR Neisseria meningitidis serogroup B strain MC58 genome db N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project N.punctiforme - Nostoc punctiforme genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project P.aeruginosa db - Pseudomonas aeruginosa genome db P.fluorescens - Pseudomonas fluorescens genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a SWISS-PROT list - Links to Rhizobium plasmid pNGR234a SWISS-PROT entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.sphaeroides - Rhodobacter sphaeroides genome project R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii SWISS-PROT list - Links to Rickettsia prowazekii SWISS-PROT entries R.prowazekii - Rickettsia prowazekii strain Madrid E genome project S.typhimurium SWISS-PROT list - Links to S.typhimurium SWISS-PROT entries S.typhimurium - S.typhimurium genome project RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aromaticivorans - Sphingomonas aromaticivorans genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes - Streptococcus pyogenes strain M1 genome project PCC 6803 SWISS-PROT list - Links to Synechocystis PCC 6803 SWISS-PROT entries CyanoBase - Synechocystis PCC 6803 db Synechococcus - Marine synechococcus genome project T.fusca - Thermomonospora fusca genome project TmDB - TIGR Thermotoga maritima genome db TpDB - TIGR Treponema pallidum genome db T.erythraeum - Trichodesmium erythraeum genome project U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - TIGR Vibrio cholerae genome db X.citri - Xanthomonas cititi genome WWW site X.fastidiosa - Xylella fastidiosa genome WWW site X.fastidiosa at DOE - DOE Xylella fastidiosa genome project Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome WWW site Y.pestis at CNBP - Yersinia pestis genome WWW site
Archaea
A.pernix - Aeropyrum pernix K1 genome db AfDB - TIGR Archaeoglobus fulgidus genome db Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db M.jannaschii SWISS-PROT list - Links to M.jannaschii SWISS-PROT entries MjDB - TIGR Methanococcus jannaschii genome db MjFdb - Methanococcus jannaschii functions db M.barkeri - Methanosarcina barkeri genome project P.abyssi - Pyrococcus abyssi genome project and db P.furiosus - Pyrococcus furiosus genome project P.horikoshii - Pyrococcus horikoshii OT3 db SGP - Sulfolobus solfataricus strain P2 genome project T.acidophilum - Thermoplasma acidophilum genome project T.volcanium - Thermoplasma volcanium genome project
Viruses and phages
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses HCVDB - Hepatitis C virus db HIV - HIV and related species db HPV - Human papillomaviruses db Influenza sequence db Picornavirus - Picornavirus home page and access to db Tobamoviruses   PhageBase Bacteriophage ecology group   GOLD - Genomes On-line db DOGS - Database of genome sizes
Back to TOP

Human mutation databases/resources
HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGBASE - Human Genic Bi-Allelic Sequences db The SNP consortium dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db   List of mutation databases from OMIM List of mutation databases from IMT (Finland)   ADAbase - Human adenosine deaminase (ADA) mutation db ADB - Albinism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) KMeyeDB - Eye disease genes db FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db (Haemophilia A) HAeMB - Human Factor IX mutation db (Haemophilia B) FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) G6PD - Human G6PD deficiency resource Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia) GNAS1 - Human GNAS1 mutation db GM2 gangliosidoses - Human Hexosaminidase A (HEXA), B (HEXB) and GM2A mutation db (Tay-Sachs/Sandhoff diseases) HbVar - Hemoglobin variants db Hereditary hearing loss homepage IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID) L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db LQTSdb - Long QT syndrome db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db NF1 - NF1 Genetic Mutation Analysis Consortium web site OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases TSC - TSC (TSC1/TSC2) variation db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db X-ALD mutation - Human ABCD1 mutation db
Back to TOP

Gene(s)/protein(s) specific databases/resources
AAA - AAA family of ATPases server Arabidopsis ABC transporters Acetylcholinesterases ADAMTS - Apte lab ADAMTS and ADAMTSL resource ALDH - Aldehyde dehydrogenase gene superfamily db Allergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT Allergen sequence db Alginate genes - Pseudomomonas alginate production genes Aminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT AARSDB - Aminoacyl-tRNA synthetases db Aminoacyl-tRNA synthetases from P. Dessen AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody related Web resources AraC-XylS - AraC/xylS transcriptional regulator family db Bacillus thuringiensis toxin specificity db TFII - Basal transcription factors Blood group antigens in SWISS-PROT BCGD - Breast cancer genes db from MBCR BRENDA - Db of enzyme functional data EF-hand CaBP - EF-hand calcium-binding proteins db CANSITE - Signal Transduction's Web CAZy - Carbohydrate-Active enZYmes Web site CBS domain - Cystathionine Beta Synthase domain WWW page CD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD) CD antigens in PROW - Database on information about CD antigens Chaperonin - Information on GroEL and GroES chaperonins Conotoxins - Information on conotoxins from a Web site on cone shells Cytokines Web - Structure and function of cytokines and their receptors COPE - Cytokines On-line Pathfinder Encyclopedia [Mirror in Israel] dbCFC - Cytokine family cDNA db R&D Systems' Cytokine mini reviews DExH/D protein family db DnaB helicase DPInteract - DNA-Proteins interactions db EMP - Enzymes and Metabolic Pathways db ENZYME - Enzymes nomenclature db Worthington enzyme manual Eph - Eph receptor tyrosine kinases and their ligands (ephrins) resource EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Expansins web site Modules - Extracellular proteins modules (domains) FADPNR - FAD-dependent pyridine nucleotide oxidoreductases Flavodoxins FlyNets - Db of molecular interactions in Drosophila melanogaster FYVE finger domain GABAagent - GABA receptors WWW site Globin - Globin gene server Glucoamylases Glycosyl hydrolases in SWISS-PROT - Nomenclature and index of glycosyl hydrolases in SWISS-PROT 7TM in SWISS-PROT - List of G protein coupled receptors in SWISS-PROT GCRDb - G protein-coupled receptor db GPCRDB - G protein-coupled receptor db (7TM) at EMBL ORDB - Olfactory receptor db HORDE - Human Olfactory Receptor Data Exploratorium GRAP - G protein coupled receptors family A mutants db GRR - Glucocorticoid receptor resource Arabidopsis Glucosyltransferases Web site Glycosyltransferases - A guide to cloned glycosyltransferases GnRH - Gonadotropin-releasing hormones (GnRH) family GyrB - GyrB protein Yeast RNA helicases Histone - Histones db HIVdb - HIV protease db HotMolecBase - Molecules (mainly proteins) that are promising targets for medical applications Homeobox - Homeobox domain proteins resource HOX-Pro - Homeobox genes db Hox proteins in SWISS-PROT - Vertebrate homeotic Hox proteins: nomenclature and index of SWISS-PROT entries Labial - Homeobox genes, labial family HSP100 - HSP100/ClpAB family of chaperones InBase - Inteins db from the New England Biolabs Integrins Meganucleases - Sites on intron encoded endonucleases ICN - The Ion Channel Network Initiation factors in SWISS-PROT - List and index of translation initiation factors in SWISS-PROT IF2 - Translation initiation factor IF2 db KEGG - Kyoto Encyclopedia of Genes and Genomes Kinesin - Kinesin motor proteins Klotho - Biochemical compounds declarative db LGIC - Ligand Gated Ion Channel subunit db LED - Lipase Engineering Database Lipocalin Website MDB - Metalloprotein Site Database and Browser Metallothioneins in SWISS-PROT - Nomenclature and index of metallothioneins in SWISS-PROT MT - Metallothioneins MHCPEP - MHC binding peptides db SYFPEITHI - MHC ligands and peptide motifs db Mitochondrial carriers pages from Nelson's lab MitoPick - Mitochondrial NADH-ubiquinone reductase (complex I) web site MRR - Mineralocorticoid receptor resource Mutator - Transposases, Mutator family MutBase - Mutation spectra db (Db on mutants of several bacterial and mammalian genes) MutS - MutS family Neurotrophic factors NucleaRDB - Federated db on nuclear receptors P450 pages from Nelson's lab P450 - Directory of P450-containing systems Arabidopsis P450 Web site Drosophila P450 Web site IARC p53 db - IARC db of somatic p53 mutations PDZ domain - PDH/DHR domain WWW page PDE - Phosphodiesterases Peroxidases Plant Peroxidases Peptidases in SWISS-PROT - Nomenclature and index of peptidases in SWISS-PROT MEROPS - Peptidase db Prolysis - Proteases and inhibitors server Protein Degradation Resource PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db PKR - Protein Kinase Resource PatBase - P-type ATPase db PPAR - Peroxisome Proliferator-Activated Receptor resource PPDB - Phosphoprotein db Proteoglycans Phytochromes - Computer analysis of phytochrome sequences RecA - RecA protein REBASE - Restriction enzymes and methylases db Restriction enzymes/methylases in SWISS-PROT - List of restriction enzymes and methylases in SWISS-PROT Ribosomal proteins in SWISS-PROT - Families and index of ribosomal proteins in SWISS-PROT Ribosomal proteins - Analysis of R proteins by Nikos Kyrpides RNase P - Ribonuclease P db Scorpion - Scorpion toxin db SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family TRR - Thyroid hormone receptors resource TRANSFAC - Transcription factors db TRANSPATH - Signal Transduction Browser Transport Classification System - from Milton Saier UDP Glucuronosyltransferases V BASE - Directory of human V gene sequences (Immunoglobulin germline variable region) VDRR - Vitamin D receptor resource International venom and toxin db WD-repeat - WD-repeat proteins family WIT - 'What is There' metabolic models db Wnt gene homepage WormPep - C.elegans proteins db YTPdb - Yeast Transport Protein db
Back to TOP

Post-translational modifications databases and resources
DSDBASE - Disulfide database (derived from 3D data) GlycoSuiteDB - Db of glycan structures O-GlycBase - O-glycosylated proteins db PhosphoBase - Phosphorylation sites db RESID - Db of Amino Acid Modifications Delta Mass - Db of mass of Post-Translational Modifications
Back to TOP

Phylogenetics databases and resources
TreeBASE - Relational db of phylogenetic information The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms RDP - Ribosomal db Project ICB - Identification and Classification of Bacteria
Back to TOP

Microarray databases and resources
ArrayExpress - MicroArray informatics at the EBI ChipDB - Gene expression db ExpressDB - Yeast and E.coli RNA expression db GeneX - Gene Expression project GEO - Gene Expression Omnibus RAD - RNA abundance db SMD - Stanford microarray db
Back to TOP

Patents databases
DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents from the USDA   USPTO patent db - USA Patent and Trademark Office patent db Esp@cenet - Patent information database from the European Patent Office (worldwide coverage)
Back to TOP

References (bibliographic databases)
PubMed Medline server AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db PRF/LITDB - Protein Research Foundation Literature db (Japan) Korean Journals Abstract db UnCoverWeb   Hydrogenase references db   SeqAnalRef - Sequence analysis bibliographic references
Back to TOP

Dictionaries, primers, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service BioTech's life science dictionary DCB - Dictionary of cell biology by Julian Dow   AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acid properties - Physico and chemical information on amino acids Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Delta Mass - Db of mass of Post-Translational Modifications Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Genetic codes - List of non-standard genetic codes from NCBI Genetic code Viewer - Genetic code viewer at EBI Genes 2000 - Online version of Benjamin Lewin Genes textbook Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Protease protocols - methods to cleave protein sequences Ion Source - Mass spectrometry resource Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Burkhard Rost and Reinard Schneider Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD) Biocomputing tutorials - EMBnet Biocomputing tutorials BioComputing Hypertext Coursebook - from VSNS BCD BioActivity - Protein sequence and structure analysis: a practical guide Homology modelling course - from the EMBL Tutorial on secondary structure prediction - from Harry Mangalam / UC Irvine Introduction to Glycolysis - from Leeds University Molecular biology protocols - from NWFSC Molecular biology protocols - from MBS (Molecular Biology Shortcuts) Graphics Gallery - Access Excellence (Genentech) Biotechnology graphics gallery Abbreviations of chemical compounds List of nomenclature related references for proteins - from SWISS-PROT GO - Gene Ontology Consortium WWW site HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) BIOSIS glossary of nomenclature terms in zoology   Nobel Foundation Website The Nobel prize Internet Archive   NCBI Taxonomy BIOSIS Codes of Nomenclature for the naming of organisms List of Bacterial Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
Back to TOP

Biological software and databases catalog servers
BioCatalog - The BioCatalog at EBI Yellow BAGI - Bio Access Guide to the Internet at Houston University Software library from Genamics.com DBCAT - Databases catalog at INFOBIOGEN
Back to TOP

Gateways (portals) to Life Sciences resources
Art's Biotechnology Resource Biofind - Biotechnology industry information, gossip and news Bioinformatik.de - Web directory for bioinformatics BioNetbook - Institut Pasteur gateway to biosites Bioplanet - The bioinformatics homepage BSL - BioScience links from Russia Biotaq.com BioTech BioView - Site for Biopharmaceutical jobs, news, information and resources GenomeWeb Highveld.com - Internet Directory of Biology and Biotechnology Genomics Website at Wiley Molecular Biology Gateway from Horizon Press LabVelocity - Resource for biotechnology and life science Macromol Online Network Science MBS - Molecular Biology Shortcuts Symbios, Inc. - Biotechnology and pharmaceutical career service The Genomics Center   Chemdex.com - Online reagent ordering resource
Back to TOP

Biological journals and publishers
Resources that links to journals home pages
SWISS-PROT journals list - Provides direct links to most biological journals home pages PubList.com - Internet Directory of Publications Biochemistry and Molecular Biology Journals - Jim Beasley page of biological journals Medical journals list from Joe Buenker Medical Journal Online - List of journals from the University of Texas Research Medical Library Journal links from the Singapore bioinformatics center Journal index from Genamics.com Journal index from Horizon Scientific Press Mednav.com clinical journals list Mednav.com basic research journals list HUM-MOLGEN - HUM-MOLGEN communication forum home page for journals TOC MJF - Medical Journal Finder Highwire Press links to top Science Journals Medline full text lists - List of journals in Medline with Web sites   ChemConnect list of chemical journals   ISI Journal lists - Institute for Scientific Information list of journals ISSN - International Standard Serial Number organization
Publishers
AACR - American Association for Cancer Reasearch publications Allen Press, Inc. AMA - American Medical Association publications APS - American Physiological Society publications ACS - American Chemistry Society publications AP - Academic Press Alaken - Alaken, Inc. ASM - American Society of Microbiology publications Annual Reviews Arnold Publishers Bentham Science Publishers Bioline Publications BioScientifica Ltd Birkhauser Verlag Basel Blackwell Science BMJ - British Medical Journal publishing group Cell Press Churchill Livingstone COB - Company of Biologists Ltd CRC Press, Inc. CSHL - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Marcel Dekker, Inc. Elsevier Science [Mirror in the US] FASEB publications G+B - Gordon and Breach Publishing Group HighWire Press Horizon Scientific Press Humana Press, Inc. IOS Press IR - Inter-Research Science Publisher Futura Publishing Company Karger AG KAP - Kluwer Academic Publishers Editrice Kurtis JL - John Libbey Eurotext LW&W - Lippincott Williams and Wilkins Mary Ann Liebert Masson Mosby Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Portland Press Pulsus Group Inc. Rockfeller University Press Sage Science Press Sheffield Academic Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Spektrum Akademischer Verlag Springer-Verlag Swets & Zeitlinger T&F - Taylor & Francis Ltd [Mirror in the U.K.] Thieme University of Chicago Press Urban and Fischer Verlag VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. WBS - W.B. Saunders Co. Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Briefings in Bioinformatics Gene-Combis [No longer published as a separate journal] ISB - In Silico Biology   BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR)   BioInform - Global Bioinformatics new service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome Project Information Gene Letter GeneticUpdates FGN - Fungal Genetics Newsletter [Mirror in U.K.] Rice Genome Newsletter WBG - Worm Breeder's Gazette Weeds World - International Electronic Arabidopsis newsletter [Mirror at Stanford (USA)]
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury BioWorld Online Drug Discovery and Development GEN - Genetic Engineering News
General science journals
Discover magazine Nature New Scientist La Recherche Science Scientific American   Breakthrough! HMS Beagle The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
Back to TOP

Some biological societies and organizations
APS - American Peptide Society ASCB - The American Society for Cell Biology ASHG - American Society of Human Genetics ATCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen EGF - European Genetics Foundation EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FAOBMB - Federation of Asian and Oceanian Biochemists and Molecular Biologists FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies FGM - Foundation for Genetics Medicine HUGO - HUman Genome Organization HUPO - HUman Proteome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry JBS - Japanese Biochemical Society MSA - Mycological Society of America PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology   DOI - Digital Object Identifier foundation   BioJava Project - International association of developers of Java tools for bioinformatics Bioperl Project - International association of developers of Perl tools for bioinformatics Biopython Project - International association of developers of Python tools for bioinformatics Bioxml Project - International association of developers of XML tools for bioinformatics The Open lab - International collaboratory for open-sources bioinformatics R&D ISCB - International Society for Computational Biology OMG LSR - Object Management Group Life Science Research task force
Back to TOP

Biocomputing servers homepages
Europe
EBI - European Bioinformatics Institute EMBnet - European Molecular Biology Network EMBL - EMBL Biocomputing unit   SIB - Swiss Institute of Bioinformatics EMBnet CH - Switzerland EMBnet node ISREC - ISREC bioinformatics group (Lausanne / Swizerland) CBRG - Computational Biochemistry Research Group (Zurich / Switzerland)   INFOBIOGEN - GIS INFOBIOGEN; France EMBnet node ABIM - Atelier BioInformatique (Marseille / FR) B3E - Bioinformatique/Biostatistique/Biomathematique/Epidemiologie (Paris / FR) CNRS GDR 1029 - Informatique et génomes Genethon - Genethon (Evry / FR) GeneStream - Institut de Génétique Humaine (Montpellier / FR) GENOSCOPE - Centre National de Séquencage (Evry / FR) IGS - Information Génétique et Structurale (Structural and Genetic Information Laboratory) (Marseille / FR) IMPG - Action Informatique Mathématique Physique pour la Génomique Pasteur - Institut Pasteur (Paris / FR) PBIL - Pole Bio-informatique Lyonnais (Lyon / FR) DESS EGOISt - DESS Etude des Génomes: outils informatiques et statistiques DESS IAB - DESS Informatique Appliquée a la Biologie   SEQNET - SEQNET; U.K. EMBnet node Sanger - Sanger Centre (Hinxton / U.K.) HGMP-RC - MRC HGMP Resource Centre (Hinxton / U.K.) Beowulf Genomics - Wellcome Trust genome sequencing initiative WWW site BMM - Biomolecular Modelling laboratory at ICRF (London / U.K.) Brunel Bioinformatics Group - Bioinformatics Group in the Department of Biological Sciences at Brunel University (U.K.) BSM - Biomolecular Structure and Modelling group at UCL (London / U.K.) Manchester - Manchester University Bioinformatics unit (U.K.) RIO - Roslin Institute Online (U.K.)   GeniusNet - DKFZ Biocomputing Service Group; Germany EMBnet node GSF AG BIODV - Software Development for Molecular Biology at the GSF Institut fuer Sauegetiergenetik GSC - Genome Sequencing Center (Iena / Germany) MDC:Bioinf - Department of Bionformatic of the Max Delbruck Center for Molecular Medicine (Germany) MIPS - Munich Information Centre for Protein Sequences (Germany) VSNS BCD - Virtual School of Natural Sciences Biocomputing Division from the University of Bielefeld (Germany)   BCC - Vienna University Department for Biocomputing; Austria EMBnet node BEN - Belgium EMBnet node BIOBASE - Denmark EMBnet mode CBS - Center for Biological Sequence Analysis (Technical University of Denmark) CSC BioBox - CSC; Finland EMBnet node IMBB - Greece EMBnet node ABC - Agricultural Biotechnology Center (Budapest / Hungary) INCBI - Irish National Center for Bioinformatics; Ireland EMBnet node TigemNet - Telethon Institute of Genetics and Medicine Bioinformatics resources (Italy) CMBI - Center for Molecular and Biomolecular Bioinformatics; Netherland EMBnet node BIO - Norway EMBnet node IBB - Institute of Biochemistry and Biophysics (Warsaw); Poland EMBnet node Pen - Portugal EMBnet Node Belozersky Institute - Belozersky Institute (Moscow); Russia EMBnet node MGS - Molecular Biological Server (Novosibirsk / Russia) CNB - Centro Nacional de Biotecnologia; Spain EMBnet node BMC - BioMedical Centre at Uppsala; Sweden EMBnet node KISAC - Karolinska Institute (KI) Sequence analysis facility LCB - Linnaeus Centre for Bioinformatics SBC - Stockholm Bioinformatics Center NBN - National Bioinformatics Node; Turkey EMBnet node Bioserver - Biocomputing server at Bogacizi University (Turkey)
USA and Canada
NCBI - National Center for Biotechnology Information   ABCC - Advanced Biomedical Computing Center at the NCI ACGT - Advanced Center for Genome Technology at the University of Oklahoma BCM HGC - Baylor College of Medicine Human Genome Center BDGP - Berkeley Drosophila Genome Project BioTech - BioTech biology/chemistry educational resource and research tool BIC - The Biotechnology Information Center BMERC - Biomolecular Engineering Research Center CBIL - Computational Biology and Informatics Laboratory at the University of Pennsylvania CUBIC - Columbia University Bioinformatics Center GSC - Genome Sequencing Center at Washington University HGP Columbia - Human Genome Project at Columbia University IBC - Washington University Institute for Biomedical Computing LANL - Los Alamos National Laboratory (LANL) center for human genome studies LBNL - Lawrence-Berkeley National Laboratory (LBNL) Human Genome informatics group MBCR - Molecular Biology Computational Resource at Baylor College of Medicine NCGR - National Center for Genome Resources NIH - NIH molecular biology SAGC - The San Antonio Genome Center TIGR - The Institute for Genome Research UCLA - UCLA Bioinformatics Institute Biocomputing at Whitehead Institute for Biomedical Research WICGR - Whitehead Institute Center for Genome Research   CBR - Canadian Bioinformatics Resource BiSC - Bioinformatics Supercomputing Centre
Asia
APBioNet - Asia-Pacific Bioinformatics network   BIC-JNU - Bioinformatics Center of Jawaharlal Nehru University DIC - University of Pune (India) Bioinformatics Centre   Japanese GenomeNet NIG - National Institute of Genetics of Japan KDRI - Kazusa DNA Research Institute   CBI - Peking Center of Bioinformatics; Chinese EMBnet node MICRO-NET - Microbial Information Network of China HKBIC - Hong Kong Bioinformatics Center   BRIC - Biological Research Information Center (Korea) BIC - BioInformatics center of the National University of Singapore
Australia
APBioNet - Asia-Pacific Bioinformatics network   ANGIS - Australian National Genomic Information Service ANU - Australian National University Bioinformatics group APAF - Australian Proteome Analysis Facility
Others
HUJI - Hebrew University of Jerusalem genomic and bioinformatics server Weizmann Bioinfo/BCU - Weizmann Institute of Science Bioinformatics and Biological Computing   SANBI - South African BioInformatics Institute   BDT - Base de Datos Tropical (Sao Paulo / Brazil) LBI - Bioinformatics Laboratory at the Institute of Computing of the University of Campinas (Brazil)   ICCBnet - International Center for Cooperation in Bioinformatics Network ICGEB - International Center for Genetic Engineering and Biotechnology (Trieste / Italy)
Back to TOP

Biotechnology and pharmaceutical companies
NBIF Biotechnology company registry Pharmaceutical Research and Manufacturers of America membership list Bioportfolio - Gateways to biobusiness   ABTI - Alpha-Beta Technology, Inc. Affymetrix, Inc. AlphaGene, Inc. Amersham Pharmacia Biotech Amgen ARIAD Pharmaceuticals, Inc. AS - Ares-Serono AstraZeneca Pharmaceuticals Atheris Laboratories SA Bayer Biacore Int. AB Bio Balance, Inc. Biogen, Inc. Bio-Rad Laboratories, Inc. BioSystematica BioVisioN GmbH BTC - BioSpecifics Technology Co. Caprion, Inc. Celera Genomics Co. Cellectis SA CST - Cell Signalling Technology Centocor, Inc. Ciphergen Biosystems, Inc. Clontech Laboratories, Inc. Cognetix, Inc. CSL - CSL, Ltd. CuraGen Co. deCODE Genetics, Inc. Destiny Pharma Ltd. DGT - Digital Gene Tecnology, Inc. Diversa Co. DNA Sciences, Inc. Eli Lilly Emerald BioStructures, Inc. Entelechon GmbH EnviroLogix, Inc. Enzon, Inc. Epidauros Biotechnologie AG Europroteome SA EVOTEC BioSystems AG EPI - Exelixis Pharmaceuticals, Inc. Fermentas AB Genaissance Pharmaceuticals, Inc. Genencor International, Inc. Genentech, Inc. Genetics Institute GeneProt - Geneva Proteomics Genome Express, SA Genomic Solutions, Inc. Genset Genzyme Co. Geron Co. Glaxo Wellcome Gryphon Sciences GTC - Genome Therapeutics Co. (Collaborative Research Inc.) Helix Biopharma Co. HGS - Human Genome Sciences, Inc. Hoechst Hoechst Marion Roussel HRI - Helix Research Institute, Inc. Hybrigenics SA Hyseq, Inc. Illumina, Inc. Incyte Pharmaceuticals, Inc. Integrated Genomics, Inc. Invitrogen LAROVA Biochemie GmbH LSB - Large Scale Biology Co. LTI - Life Technologies, Inc. Lynx Therapeutics, Inc. Memorec - Medical Molecular Research Cologne GmbH MPI - Millennium Pharmaceuticals, Inc. Millipore Co. MOLOGEN GmbH Myriad Genetics, Inc. NEB - New England Biolabs, Inc. NGI - National Genetics Institute Nonlinear Dynamics Ltd Novo Nordisk OGS - Oxford GlycoSciences Parke-Davis Peptech Ltd. Pfizer, Inc. Pharmacia Biotech Pharmacopeia, Inc. Pharmingen Pharsight Co. Phylos, Inc. Prionics AG Promega Co. MDS Protana A/S Proteome, Inc. PSL - Proteome Systems Ltd ProZyme, Inc. QIAGEN GmbH Repligen Co. Research Genetics, Inc. Roche Bioscience Sanofi-Synthelabo SB - SmithKline Beecham Sequenom Industrial Genomics Shire Pharmaceuticals Group plc Sigma-Aldrich Syntgenta Synt:em TBC - Texas Biotechnology Co. TopLab GmbH Vertex Pharmaceuticals WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH Worthington Biochemical Co. Xenometrix, Inc. Xerion Pharmaceuticals GmbH Yamanouchi Pharmaceuticals Co. Zycos, Inc. 5 Prime, Inc.
Back to TOP

Bioinformatics companies
Accelrys, Inc ACD - Advanced Chemistry Development, Inc. AlgoNomics NV ApoCom, Inc. Base4 Bioinformatics BioBridge Computing (formerly Balthazar BioComputing) BIOBASE - Biologische Datenbanken GmbH Biodatabases.com - Biological databases division of Amita Corp. BioDiscovery, Inc. Biomedical Computing, Inc. BIOSIS BIOSOFT BioTools, Inc. Caesar Software LLC CallistoGen AG Cognia Corporation, Inc. Compugen [USA | Israel] Data4S Bioinformatics NV DGT- Digital Gene Technologies, Inc. DNA* - DNAStar DoubleTwist, Inc. (formerly Pangea Systems) eBioinformatics EraGen Biosciences FQS - FQS Poland Sp. z.o.o. Genamics GeneBio - Geneva Bioinformatics SA Gene Codes Co GeneData AG Geneformatics, Inc. Gene-IT SA Gene Logic, Inc. GENETYX - Software Development Co, GENETYX software Genomatix Software GmbH GenoMining, SA Genomica, Inc. Geospiza, Inc. Hitachi - Hitachi USA Genetic Systems InforMax, Inc. InGenuity Systems, Inc. Inpharmatica Lambda-Plus SA LION Bioscience AG MASA - Mathématiques Appliquées SA Matrix Science Ltd MDL - MDL Information Systems, Inc. MediGenomix GmbH Metaphorics LLC Microrite Neomorphic Software, Inc. NetGenics Net-ID, Inc. Paracel, Inc. Partek, Inc. - Pattern Analysis and Recognition Technologies PE Informatics - Perkin-Elmer Informatics PREMIER Biosoft International Protein Pathways, Inc. ProteoMetrics Redasoft Sagitus Solutions ScienceFactory GmbH Scitech SGI - Silicon Graphics, Chemistry and Biological Sciences Silicon Genetics, Inc. Spotfire, Inc. SBI - Structural Bioinformatics, Inc. SGX - Structural GenomiX, Inc. TimeLogic Corp. Bioinformatics Division Tripos Inc. Viaken Systems Inc. WebGenetics
Back to TOP

BioMolecular Java applications and demos
JaMBW - Java-based Molecular Biology Workbench   CINEMA - Interactive multiple alignment editor HelixWheel - Tools to represent a protein fragment as an helical wheel Shuffle - Randomly shuffle a sequence PDB3D - 3D molecule display DNA Primer Melt Calculator SStructView - RNA secondary structure viewer BioViews - Drosophila genome exploration tools Flies in your Java - Map display of Drosophila genes, aberrations, clones, etc.
Back to TOP

Other links

Miscellaneous medical references sites
HON - The Health On the Net foundation server Hardin MD - Hardin meta directory of Internet health sources Mednav.com - Guide to the Internet medicine MedWeb - Medical links site   FDA CDER - FDA Center for Drugs Evaluation and Research NLM - National Library of Medicine   MedicineNet - Medical Reference Site MMRL - Multimedia Medical Reference Library OMD - On-line medical dictionary (on CancerWEB) OMNI - Organising Medical Networked Information Medline Plus - NLM list of resources for health questions ORPHANET - Resource dealing with rare diseases and orphan drugs ORD - Office of Rare Diseases ReutersHealth - Reuters Medical News PharmInfoNet - Pharmaceutical Information Network NMDWD - New Medicines in Development WebDatabase Prous Science - Medical and drug information provider TOXNET - Toxicology, hazardous chemicals and related areas db Visible Human at EPFL - EPFL server for the images of the "Visible Human" NLM project   DrugDB - Db of information about drugs Electronic Orange Book - FDA list of approved drug products
Back to TOP

Miscellaneous scientific references sites
Chemcyclopedia Online - Db of commercialy available chemicals Periodic table of the elements Interactive periodic table of the elements   IDB - Internet Directory for Botany BIOSIS index to Resource Guide to Zoology web files   SciCentral - Gateway to the best science directories TheScientificWorld - Portal to science resources UniGuide Academic Guide to the Internet   The Nine Planets Planetary Society NASA Earth and moon viewer - View the earth or the moon from any geographical or astronomical position J-Track 3D - View satellite tracking information Microsoft TerraServer - World imagery db SETI league - Organization to Search for Extra-Terrestrial Intelligence
Back to TOP

Miscellaneous general references sites
Library of Congress British Library Encyclopaedia Britannica and other resources Encarta - Microsoft encyclopedia Internet Encyclopedia A Web of on-line dictionaries - Links to many dictionaries in a variety of languages Roget's Thesaurus Webster dictionary and thesaurus Dictionary of acronyms Jargon File - Electronic version of the 'New Hacker's Dictionary' Word Play - Site with links to many Word-related sites Jennifer's language page A collection of word oddities and trivia GO Translator - Web page computerized translator IMDb - Internet Movie Database The Greatest Films City Net - Repository of touristic information CIA - Central Intelligence Agency server Internet Disaster Information Center Europa - European Union official server WED - World email directory Units converter Universal currency converter Calculating Machines Beliefnet - Portal for religious sites
Back to TOP

News
ABC CNN Courrier International News from Reuters Newsweek Time Magazine USA Today L'Hebdo - 'Webdo' Edipresse Le Temps International Herald Tribune Le Monde Diplomatique The New York Times Jerusalem Post Slate News.Com - Computer news Weather forecasts Excite NewsTracker - Service to search on-line news sources News Index - News search engine
Back to TOP

Computing-related links
Shareware directory Perl - Perl language home page Gnu - Gnu project home page Linux - Linux operating system home page Java - Java programming language 'home' site Winfiles.com - Windows 95, 98, NT Web Site Win95 annoyances - Windows 95 annoying features and workarounds Gamelan - Earthweb's Java directory Easter Egg Archive List of files extensions and formats The Icon Bank - Db of icons Internet Gallery of GIF Animation Animation City - Animated GIF site Opera Software - An alternative browser (fast and efficient) Webshots - Wallpaper and screen saver software Search Engine Watch - Information on Web search engines
Back to TOP

Recreational links
BOFH - The Bastard Operator from Hell archives La revolution des fourmis - Site sur la trilogie des fourmis de Bernard Werber Leonard's cam world - World list of on-line video cameras EarthCam - A comprehensive reference directory of on-line video cameras Images.com - WebCam theater (Live Cams!) AIR - The Annals of Improbable Research Darwin awards - Given to individuals that remove themselves from the gene pool in the most spectacular fashion Science Made Stupid Swiss-Jokes - ExPASy collection of scientific jokes Science Jokes - Jokes collected by Joachim Verhagen AGD antics and mayhem page - More 'scientific' experiments !! Backyard ballistics DMRD - Dihydrogen Monoxide Research Division MIT Hacks archive - A compendium of (elaborate) practical jokes organized at MIT Strawberry pop-tart blow-torches George Goble home page - Or how to start a barbecue in 3 seconds (with liquid oxygen !) MoonShop - The Moon Shop; how to get a property on the Moon! The comics hotlist Stus' Comic Strip Connection Over the Edge Today's Cartoon - Randy Glasbergen cartoons Human genome cartoons Amused.com Cryptozoology WWW site SIPP - Structure of Interactive Psycho Philosophy (explain the universe through DNA!) geNUM - Numerical Genetics (yes another weird site!)
Back to TOP